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+#!/usr/bin/env bash
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+#
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+# Initialise or Upload changes from inside repository
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+# using GIN CLI
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+# Works with submodules and repo made by tonic v1 (not copying submodules content).
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+# needs git config to be set
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+# needs SSH access to GIN
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+# future dvt using datalad will allow use of non-GIN repositories
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+
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+# logic: template has a specific file to label it needs initialisation.
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+# if this file is present, code 1 is done: template_initialisation
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+# if it is absent but submodules are empty, code 2 is done: submodule_initialisation
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+# if none of the above code 3 is done: synchronisation
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+
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+# Set folder where script will be executed
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+loc=$(dirname $0)
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+projectdir=$(git -C ${loc} rev-parse --show-toplevel)
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+
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+pushd ${loc} > /dev/null
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+
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+## set gin server and remote
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+
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+sh .scripts/setginserver
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+
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+
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+#login if needed
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+if ! gin info; then
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+ echo "set gin login"
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+ gin login
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+else
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+ echo "gin logged"
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+fi
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+
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+## code 1
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+if test -f "00repo_needs_initialisation00.txt" ;
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+ then
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+ echo "running project repository initiation (first run)"
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+ sh .scripts/template_init.command
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+fi
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+
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+## code 2
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+
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+if grep -q 06_dissemination ".gitmodules";
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+ then
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+ if (test -f "06_dissemination/README_DISSEMINATION.md") ;
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+ then
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+ echo "submodules are initialised"
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+
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+ else
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+ echo "initialising submodules"
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+ gin git submodule update --init --recursive
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+ gin git submodule foreach gin init
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+ fi
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+ else
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+ echo "not a tonic repo, please initialise submodules manually if there are any"
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+fi
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+
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+
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+## code 3
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+
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+
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+usage() {
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+ echo "$0 <sync-option>"
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+ echo
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+ echo "<sync-option> The sync option defines what to do with the content of large files."
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+ echo " It should be one of the following values:"
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+ echo " download - Download all large file content from the server"
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+ echo " keep - Keep all large file content but do not download missing large files"
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+ echo " remove - Do not download large files and remove existing local large file content"
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+ exit 1
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+}
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+
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+# Set the variable for synchronisation option, see above
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+syncopt="remove"
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+
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+echo "start synchronisation in "$syncopt" mode, close window to cancel. change mode by changing the code in a text application"
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+sh .scripts/GIN-SYNC
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